SE2520873

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2103
  • Brachypodium distachyon
  • SE2520873
  • Mutator
  • M41
  • Bd1:7877178-7877743
  • GCTCTCCGA
  • GAGAGGAAATTGCACATTCCACCACCTATTGGAGATGTTGTTGCGCAAAACACCACTTCTACGAATTTTTTTGTAGATTTCACCACATGTTGATCTAATGAGTTGCAGATAGGTCTTAATAGCGTGTTAGGTGAGCTAACCACATTTTGACCCGTGGGCCCCGCGTGTCAGTGCCAACGTGGACCGAGCC

Secondary structure and sequence

TSD    TIR
5'



3'
GCTCTCC A                              A                                TT                         A                                          C   C   A    -    C     C  C                   G        -CCTTAC          T A       -CT        CAA      T         C C   ---------------------     G A  - AGA
       G GAGGAAATTGCACATTCCACCACCTATTGG GATGTTGTTGCGCAAAACACCACTTCTACGAA  TTTTTGTAGATTTCACCACATGTTG TCTAATGAGTTGCAGATAGGTCTTAATAGCGTGTTAGGTGAG TAA CAC TTTT GACC GTGGG CC GCGTGTCAGTGCCAACGTG ACCGAGCC       CACGGTGGAT G GTCGGGT   GAGCCAAC   TTAAAA GAAATCATG C GAT                     TCGGT G GG C   
       | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||| ||||| || ||||||||||||||||||| ||||||||       |||||||||| | |||||||   ||||||||   |||||| ||||||||| | |||                     ||||| | || |    
       C CTCCTTTAACGTGTAAGGTGGTGGATAACC TTGCAACAACGCGTTTTGTGGTGAAGATGCTT  AAAAACATCTAAAGTGGTGTATAAC AGATTACTCAACGTCTATCCAGGATTATCGCACAATCTGCTC ATT GTG AAAG CTGG CACCC GG TGTACAGTCACGGTTGCAC TGGCTCGG       GTGCCACCTG C CAGCCCA   CTTGGTTG   AATTTT TTTTAGTGC G CTA                     AGCCA C CC G   
AGCCTCT G                              C                                -T                         C                                          A   A   C    T    A     A  A                   A        TAAAACA          T -       AAC        ACC      C         A A   CTCTAAAGTTTTATACCATTT     G -  A CCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End