Plant MITE

SE2530880

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2110
Brachypodium distachyon
SE2530880
hAT
Hat9
Bd1:41278631-41278932
GCCTGGAC
CCTGGACTATACCTAGGCA

Secondary structure and sequence

TSD TIR

5'

3'

 G  T  A        A    -   CCTGAGCCGGGCCGGGTCGGGCCGGGCTTCATAAAAGCCCGACAGTCAAACCTGAAGCCCGAGCCCGGCCCGAAGCCCGGAAAATAGGGTTTTTAAGCATTAAAATAATTATTTTCACAATAAATAA
  CC GG CTATACCT GGCA AAC                                                                                                                               
  || || |||||||| |||| |||                                                                                                                               A
  GG CC GATATGGA CCGT CCC                                                                                                                               
CA  T  -        C    A   ACCGGGCCGAACTTCGGGCCACATGGCCCGATCCGGGTACAAAGTGAAAAGACGGGTTTCGGGTAGGGCTTTCGGGTTTTACCGAATTTAACTCATAAAAAAATCCTTTTTATCTATATTTTTATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530880

GCCTGGACTATACCTAGGCAAACCCTGAGCCGGGCCGGGTCGGGCCGGGCTTCATAAAAGCCCGACAGTCAAACCTGAAGCCCGAGCCCGGCCCGAAGCCCGGAAAATAGGGTTTTTAAGCATTAAAATAATTATTTTCACAATAAATAAATGTATTTTTATATCTATTTTTCCTAAAAAAATACTCAATTTAAGCCATTTTGGGCTTTCGGGATGGGCTTTGGGCAGAAAAGTGAAACATGGGCCTAGCCCGGTACACCGGGCTTCAAGCCGGGCCACCCATGCCCAGGTATAGCCTGGAC

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