Plant MITE

SE2510885

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2115
Brachypodium distachyon
SE2510885
Tc1/Mariner
St14
Bd2:51103882-51104125
TA
TACTCCCTCCGTTCTATTTGAAAAGGCATATAAGGCTTCATCAAGACAAGGCTTTGACCACAAATTACTATGTTAA

Secondary structure and sequence

TSD TIR

5'

3'

            TC   T   --A         A   C   ATC                  CA       ATG    ---       TTTATATAACATGAAATTAGTATTGCTAGATTCCTTA
TACTCCCTCCGT  TAT TGA   AAGGCATAT AGG TTC   AAGACAAGGCTTTGACCA  AATTACT   TTAA   GATTTCG                                     
||||||||||||  ||| |||   ||||||||| ||| |||   ||||||||||||||||||  |||||||   ||||   |||||||                                     T
ATGAGGGAGGCA  ATG ACT   TTTCGTATA TTC GAG   TTCTGTTCCGAAACTGGT  TTAATGA   AATT   CACCGAA                                     
            --   T   ATA         A   A   CAA                  TC       GAA    ATG       CATTCTATACTTTGGTGTTGTTAATAATGCATGAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510885

TACTCCCTCCGTTCTATTTGAAAAGGCATATAAGGCTTCATCAAGACAAGGCTTTGACCACAAATTACTATGTTAAGATTTCGTTTATATAACATGAAATTAGTATTGCTAGATTCCTTATCAAAGTACGTAATAATTGTTGTGGTTTCATATCTTACAAGCCACGTATTAAAAGAGTAATTCTTGGTCAAAGCCTTGTCTTAACGAGACTTAATATGCTTTATATCATGTAACGGAGGGAGTA

Copy Cancel