Plant MITE

SE2550886

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2116
Brachypodium distachyon
SE2550886
PIF/harbinger
To21
Bd4:10782504-10782781
TAA
AGGCTGGTCATAGTGCATGGTAACA

Secondary structure and sequence

TSD TIR

5'

3'

TA               CAT       --     -   ---   C TGTCTTTATTACTATTCTAAGTTACTACCTCCATAGTGGGTAGTAACATATATGTGGTGTCATGCATTGTGTCATTTATTAGGTTATAAACTCATCT
  AGGCTGGTCATAGTG   GGTAACA  TAGAA TAG   TAA A                                                                                                 
  |||||||||||||||   |||||||  ||||| |||   ||| |                                                                                                  
  TCCGACCAGTATCAC   TCATTGT  TCACA TAT   CAC G                                                                                                 
AA               -CT       TT     T   ATT   - GTTGATTCGTTTAAACTACTACACCGTACAATAATTACTCCTCTCTCTCTAAACATCATTGATCTATACAATGATATTGTAGTGTGTTTTGTTTCGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550886

TAAGGCTGGTCATAGTGCATGGTAACATAGAATAGTAACATGTCTTTATTACTATTCTAAGTTACTACCTCCATAGTGGGTAGTAACATATATGTGGTGTCATGCATTGTGTCATTTATTAGGTTATAAACTCATCTTGCTTTGTTTTGTGTGATGTTATAGTAACATATCTAGTTACTACAAATCTCTCTCTCCTCATTAATAACATGCCACATCATCAAATTTGCTTAGTTGGCACTTATATTACACTTTTGTTACTTCCACTATGACCAGCCTAA

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