SE2510888

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2118
  • Brachypodium distachyon
  • SE2510888
  • Tc1/Mariner
  • St19
  • Bd1:7316294-7316525
  • TA
  • TACTCCCTCCGTTACTTAAATCAAGGCCTATATTGTTTCCTTTGACC

Secondary structure and sequence

TSD    TIR
5'



3' 
             A       CA   - C          C        -------A   A   CTCCATCAACATGTGACTTATGTGATATAAATCATAATCATAAACAAGTACTTTTGAA
TACTCCCTCCGTT CTTAAAT  AGG C TATATTGTTT CTTTGACC        AAG TTA                                                          
||||||||||||| |||||||  ||| | |||||||||| ||||||||        ||| |||                                                           
ATGAGGGAGGCAA GAATTTA  TCC G ATATAACAAA GAAACTGG        CTG GTT                                                          
             A       -A   T C          A        CTCGGAAA   -   CTAAATTAGATAATTATATATAAAAAATACTTTATTTTAACTATAGTAACCTAAGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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