Plant MITE

SE2530890

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2120
Brachypodium distachyon
SE2530890
hAT
Hat20
Bd2:5921164-5921340
ATTGAGAC
TTGAGACTAGAGGTGCAACATGGCGACCCTCAGGGTACCCTTTGACCCTCCTTAGTTCAAACAAATGAACTAGTTTTTCAAAAGT

Secondary structure and sequence

TSD TIR

5'

3'

A  GA  C     G      ATG C                                   AA          --      TCA     TGT
 TT  GA TAGAG TGCAAC   G GACCCTCAGGGTACCCTTTGACCCTCCTTAGTTCA  CAAATGAACT  AGTTTT   AAAGT   
 ||  || ||||| ||||||   | |||||||||||||||||||||||||||||||||||  ||||||||||  ||||||   |||||    
 AG  TT ATCTC ACGTTG   C CTGGGAGTCCCATGGGAAACTGGGAGGAATCAAGT  GTTTACTTGA  TCAAAA   TTTTA   
C  AG  A     G      AAA A                                   TG          TT      ---     CTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530890

ATTGAGACTAGAGGTGCAACATGGCGACCCTCAGGGTACCCTTTGACCCTCCTTAGTTCAAACAAATGAACTAGTTTTTCAAAAGTTGTGTCATTTTAAAACTTTAGTTCATTTGGTTGAACTAAGGAGGGTCAAAGGGTACCCTGAGGGTCACAAAGTTGCAGCTCTAATTGAGAC

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