SE2530903

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2133
  • Brachypodium distachyon
  • SE2530903
  • hAT
  • Hat44
  • Bd3:36218437-36218592
  • TAGCTAAT
  • TAGCTAATTAGGGATGTCAACGGACACCGTCAAGCCCGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
        AT                 ---A               AATC     -C   CA        AGTT   TTTTTTT
  TAGCTA  TAGGGATGTCAACGGAC    CCGTCAAGCCCGTTT    AGCTT  CCG  CGGTTTTT    TTG       
  ||||||  |||||||||||||||||    |||||||||||||||    |||||  |||  ||||||||    |||        
  ATCGAT  ATCCCTACAGTTGCCTG    GGCGGTTCGGGCAAA    TCGGG  GGC  GCCGGAAA    AAC       
TA      --                 CGGC               ----     AC   AC        CTGT   CTTTCCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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