SE2530921

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2151
  • Brachypodium distachyon
  • SE2530921
  • hAT
  • Hat9
  • Bd4:6560021-6560313
  • CTTGCAAG
  • CTTGCAAGTATACCTGGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
                    -----       CCT       ---A       GTATCGGGCCGGGCTCGGGCTTTACTTTTCTGCCCAAAGCCCGGCACGAAAAAGCCTGAAATGGCTTAAATTGAGTATTTTTTAGGAAAAATAGGTATA
CTTGCAAGTATACCTGGGCA     TGGGTAG   GGCCCGA    GCCTGGT                                                                                                   
||||||||||||||||||||     |||||||   |||||||    |||||||                                                                                                    
GAACGTTCATATGGACCTGT     GCCCAGC   CCGAAGT    TCGGGCT                                                                                                   
                    TTGGG       ---       ATTT       GCCAGTTTGAACTTCGGGCTCGGGCTGGGCCGGGCTTAGGGGCTTTTATCCAGTAAATTCGTAATTTTATTAATAAAAGTCTTATTTATTTACATAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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