SE2550942

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2172
  • Brachypodium distachyon
  • SE2550942
  • PIF/harbinger
  • To11
  • Bd2:50546994-50547167
  • TTA
  • AGGCTCAGTTTGGGGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             G    CTGAA    GCTGTGCGGAACTTATTTTATAATCTGCTGTGAAAAAATACACACGAAAGCAGGAAAAG
  AGGCTCAGTTTGG GTTG     CCGT                                                           
  ||||||||||||| ||||     ||||                                                            
  TCCGAGTCAAACC TAAC     ACCT                                                           
AT             G    --TCC    AATACTGTTAGGTCGAAAAAGTTGTTCCAAAACGGATAAAAAGGTAAACCGATTGGTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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