SE2550943

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2173
  • Brachypodium distachyon
  • SE2550943
  • PIF/harbinger
  • To35
  • Bd2:4684352-4684805
  • TTA
  • AGGGCCCCTTTGATTCACAGAATTTTGA

Secondary structure and sequence

TSD    TIR
5'



3'
TT      C    G     -CA   TTT   AAAC        -     AAG   --A  AATA     ---    -  CATGTGAAAAATAGAGGATTCAAAAGCACAGTAATTTTGTAAACACAAGTGTTGGATTCATAAAAATAGGAAAGACACAGGAATACTACTAAACACAATAAAAAACAATCAAATTAAAGTCAAACCACATGTATTAGTACGTATAATTAAATGTT
  AGGGCC CTTT ATTCA   GAA   TGA    GTAGGAAT GAAAA   TAC   GG    TGGTA   GGAA TG                                                                                                                                                           
  |||||| |||| |||||   |||   |||    |||||||| |||||   |||   ||    |||||   |||| ||                                                                                                                                                            
  TCCCGG GAAA TAAGT   CTT   ACT    CATCCTTA CTTTT   GTG   CC    ACCGT   AAGC AG                                                                                                                                                           
AT      A    G     ATC   TTC   --CA        T     AAA   AAA  ----     GAG    G  TAAACTAAGTTTCCTTACCTGATCTCCCTTTTAACTCCTTTTAAAGGAAACTAGTTACAAAGTTTCCTTTTTGCGCCCTTAAATTGTCAGGTGACCACGGACAAAGAACTTAAGGATGCGTGTTTTCTGTCTTGTTGTCACAAGTAAGTATATTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End