Plant MITE

SE2510944

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2174
Brachypodium distachyon
SE2510944
Tc1/Mariner
St14
Bd5:21692256-21692501
TA
TACTCCCTCCATTCCTTGAAAGAGAGCATATTTAGCTTTCATTAAGAGAAGGCTTTGAC

Secondary structure and sequence

TSD TIR

5'

3'

          A             A       T  C           G           AAAAAAAAACTCTA    T TGTGGTTTGTAAGATATGAAACCACAAGTATTATAAAATACTTTTGATAATG
TACTCCCTCC TTCCTTGAAAGAG GCATATT AG TTTCATTAAGA AAGGCTTTGAC              TTAA A                                                    
|||||||||| ||||||||||||| ||||||| || ||||||||||| |||||||||||              |||| |                                                     
ATGAGGGAGG AAGGAACTTTCTC TGTATAA TC AAAGTAATTCT TTCTGAAACTG              GTGT T                                                    
          C             C       -  A           G           --------------    - TAATAGTACAATTCTACAGTAAATATACGGTACTTTAATCATAGCAATCTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510944

TACTCCCTCCATTCCTTGAAAGAGAGCATATTTAGCTTTCATTAAGAGAAGGCTTTGACAAAAAAAAACTCTATTAATATGTGGTTTGTAAGATATGAAACCACAAGTATTATAAAATACTTTTGATAATGAATCTAACGATACTAATTTCATGGCATATAAATGACATCTTAACATGATAATTTGTGGTCAAAGTCTTGTCTTAATGAAAACTAATATGTCCTCTTTCAAGGAACGGAGGGAGTA

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