Plant MITE

SE2530949

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2179
Brachypodium distachyon
SE2530949
hAT
Hat47
Bd2:34690449-34690630
GCTATGCC
GCTATGCCCAGTGGCGGAGCCA

Secondary structure and sequence

TSD TIR

5'

3'

  T   C    T  C       AGATTCAACCA     CAGGCCAACACTGTGTTATACAATTTGATTAGTCTAAACACCAGGCCGAAGCATATGTT
GC ATG CCAG GG GGAGCCA           AACAC                                                           
|| ||| |||| || |||||||           |||||                                                            
CG TAT GGTC CC CCTCGGT           CCGGG                                                           
  -   C    T  A       -----------     TCTGTTGCTCCCGGTACCGTACCCCAAACTTAATAAAGACAGAATACAAAATCACATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530949

GCTATGCCCAGTGGCGGAGCCAAGATTCAACCAAACACCAGGCCAACACTGTGTTATACAATTTGATTAGTCTAAACACCAGGCCGAAGCATATGTTTATACACTAAAACATAAGACAGAAATAATTCAAACCCCATGCCATGGCCCTCGTTGTCTGGGCCTGGCTCCACCTCTGGCTATGC

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