Plant MITE

SE2530957

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2187
Brachypodium distachyon
SE2530957
hAT
Hat20
Bd5:13788433-13788610
ATGACATG
ATGACATGTAGAGGTGCAACATGGTGACCCTCAGGGTACCCTTTGACCCTCCTTAGTTCAAACAAATGAACTAGATTTTCAAAAAG

Secondary structure and sequence

TSD TIR

5'

3'

    A   G     G     C  G                                   C AA             T        A TTG
 ATG CAT TAGAG TGCAA AT GTGACCCTCAGGGTACCCTTTGACCCTCCTTAGTT A  CAAATGAACTAGA TTTCAAAA G   
 ||| ||| ||||| ||||| || ||||||||||||||||||||||||||||||||||| |  ||||||||||||| |||||||| |    
 TAC GTA ATCTC ACGTT TA CACTGGGAGTCCCATGGGAAACTGGGAGGAATCAA T  GTTTACTTGATTT AAAGTTTT C   
G   A   -     G     T  A                                   A TG             T        A TGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530957

ATGACATGTAGAGGTGCAACATGGTGACCCTCAGGGTACCCTTTGACCCTCCTTAGTTCAAACAAATGAACTAGATTTTCAAAAAGTTGTGTCATTTTGAAATTTTAGTTCATTTGGTTAAACTAAGGAGGGTCAAAGGGTACCCTGAGGGTCACAATTTTGCAGCTCTAATGACATG

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