SE2520961

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2191
  • Brachypodium distachyon
  • SE2520961
  • Mutator
  • M32
  • Bd2:48291618-48292071
  • ATGGTCTTG
  • GGTCTTGAGAGAAGATATCCAGTGCTCCCACCCCTTAGTGTGCTAACGTGCTCCCAACGCACGGTAGCACCCCTAAAATGTTATCAAAAATTTCAAAATAAATTGAGTGGGTTCATAAGATATTTGTCTATCATGTTGCAAAGTTTCAAATCCAAATTAATTATATGCATAGATAAAAAAAAAGACAAATCCAGAGGCGAGTAGGTCG

Secondary structure and sequence

TSD    TIR
5'



3'
 AT  T  TGA            A           C     T      A                                T   A    A                                   T                         A        A          T   T   -             C    GGC      -    CAAAAAGATAAAAACA
   GG CT   GAGAAGATATCC GTGCTCCCACC CTTAG GTGCTA CGTGCTCCCAACGCACGGTAGCACCCCTAAAA GTT TCAA AATTTCAAAATAAATTGAGTGGGTTCATAAGATAT TGTCTATCATGTTGCAAAGTTTCAA TCCAAATT ATTATATGCA AGA AAA AAAAAAGACAAAT CAGA   GAGTAG GTCG                
   || ||   |||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| ||| ||| ||||||||||||| ||||   |||||| ||||                 
   TC GG   CTCTTCTATAGG CACGAGGGTGG GAATC CACGAT GCACGAGGGTTGCGTGCCATCGTGGGGATTTT CAA AGTT TTAAAGTTTTATTTAACTCACCCAAGTATTCTATA ACAGATGGTACAGTGTTTTAAAGTT AGGTTTAA TAATATGTGT TCT TTT TTTTTTCTGTTTA GTTT   CTTATC CAGT                
AGT  T  -TA            C           A     C      G                                T   A    C                                   C                         G        G          C   C   G             C    ATA      A    CTTAAAAAAAGAAAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End