Plant MITE

SE2510971

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2201
Brachypodium distachyon
SE2510971
Tc1/Mariner
St6
Bd4:35405690-35405929
TA
TACTCCCTCCGTTCCATAATATAAGGCACGCACGCATTTCAAGATTTTGCTTTGACCACCAGTTAGACCAACAAAATGTGAATTATATCTTATAAAAATTATACCGTCGGA

Secondary structure and sequence

TSD TIR

5'

3'

                           A G          A  A   T          C         C      A          ATC                 TC   AACTTCT    GA
TACTCCCTCCGTTCCATAATATAAGGC C CACGCATTTC AG TTT GCTTTGACCA CAGTTAGAC AACAAA TGTGAATTAT   TTATAAAAATTATACCG  GGA       TTCA  
||||||||||||||||||||||||||| | |||||||||| || ||| |||||||||| ||||||||| |||||| ||||||||||   |||||||||||||||||  |||       ||||   
ATGAGGGAGGCAAGGTATTATATTCCG G GTGCGTAAAG TC AGG TGAAACTGGT GTTAATCTG TTGTTT ACACTTAATA   AATATTTTTAATATGGT  TCT       AAGT  
                           C G          C  C   T          A         A      -          CAC                 GA   -------    AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510971

TACTCCCTCCGTTCCATAATATAAGGCACGCACGCATTTCAAGATTTTGCTTTGACCACCAGTTAGACCAACAAAATGTGAATTATATCTTATAAAAATTATACCGTCGGAAACTTCTTTCAGATATGAATCTAGTGGTATAATTTTTATAACACATAATTCACATTTGTTAGTCTAATTGATGGTCAAAGTTGGACCTCGAAATGCGTGGGCGCCTTATATTATGGAACGGAGGGAGTA

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