SE2550983

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2213
  • Brachypodium distachyon
  • SE2550983
  • PIF/harbinger
  • To14
  • Bd3:46789661-46789982
  • TTA
  • ACAGCTCGTTTGGTACCCATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               C     AT     CTTAGAATTCAGGAATTCATTTCAAATTCCAGAAACGAACTTGTTTGTTTGGCACGGAATTGGCCACGGGAATTCAATCTCAAATTCCATGGAATTGTACTATAACTAATCCCAATTCCTCTCCAAAAGCC
  ACAGCTCGTTTGGTA CCATC  TTGAG                                                                                                                                   
  ||||||||||||||| |||||  |||||                                                                                                                                    
  TGTCGGGCAAACCAT GGTAG  AAGTA                                                                                                                                   
AT               T     GA     AAGTAAACCATCTTTGCTTTACTTTAGGTTAAAAACTATCCTAAAGTAAACCAACTTAAACTTAAGTAACAAGTTTTAGTACAAACAGATGGTGTACCTAAACATCTCACTCTGTTAAGGTCTCTTTACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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