SE2530988

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2218
  • Brachypodium distachyon
  • SE2530988
  • hAT
  • Hat20
  • Bd2:318363-318540
  • TACAGTAC
  • TACAGTACTAGAGCTGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
    A   C   A C     ACTT     C                                T           AAA        T GCA
 TAC GTA TAG G TGCAA    GTGAC CTCAGGGTACCCTTTGACCCTCCTTAGTTCAA CAAATGAACTA   TTTTAAAA G   
 ||| ||| ||| | |||||    ||||| |||||||||||||||||||||||||||||||| |||||||||||   |||||||| |    
 ATG CAT ATC C ACGTT    CACTG GAGTCCCATGGGAAACTGGGAGGAATCAAGTT GTTTACTTGAT   AAGGTTTT C   
C   A   -   C C     GTAC     C                                T           CAA        T AGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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