SE2520989

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2219
  • Brachypodium distachyon
  • SE2520989
  • Mutator
  • M16
  • Bd3:43497727-43498142
  • TTGATATTA
  • TGATATTAGGCGAAGTATCCGGTGAAAATACTCATTCGGTGCAAACCATGCAAATTTCAT

Secondary structure and sequence

TSD    TIR
5'



3'
T        -                     --A   ATT          CA  C         AAAAACCATGTTT     -          C   -AC      AC             T C      CTACAAACC  C                 A    AAA      AA  G ATT       G   ATTACA          -  AAACA
 TGATATTA GGCGAAGTATCCGGTGAAAAT   CTC   CGGTGCAAAC  TG AAATTTCAT             AAAAG TTTCAAAAAA TCT   AAAAAT  CATATGTTGGGAG G GATGTT         TG AAAATTTCAAGTTCAAA TCAA   CATTTG  AG A   AAAAAGA AAA      ATGAATAGTG TC     
 |||||||| |||||||||||||||||||||   |||   ||||||||||  || |||||||||             ||||| |||||||||| |||   ||||||  ||||||||||||| | ||||||         || ||||||||||||||||| ||||   ||||||  || |   ||||||| |||      |||||||||| ||     C
 ATTATAGT CCGCTTCATAGGCCACTTTTG   GAG   GCCACGTTTG  AC TTTGAGGTA             TTTTC AAAGTTTTTT AGA   TTTTTA  GTATACAATCTTT C CTACAA         AC TTTTAAAGTTCAGGTTT AGTT   GTAAAC  TC T   TTTTTTT TTT      TACTTATCAC AG     
         T                     GTG   -AT          AC  T         -----------GC     T          A   ATT      GT             T A      AATATATAC  A                 G    AAA      CA  G CGC       G   AAAACG          C  AAAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End