SE2550991

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2221
  • Brachypodium distachyon
  • SE2550991
  • PIF/harbinger
  • To46
  • Bd4:28275116-28275276
  • CCT
  • AGTTAGGGGTGCAAACGGGATCCCGCGAAAGTCCCGCTTCTAGTTCATTTTTCAAATCTTCTATTCAAAATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CCTAA  T                    C                       T                     A    GC
     AG TAGGGGTGCAAACGGGATCC GCGAAAGTCCCGCTTCTAGTTCA TTTTCAAATCTTCTATTCAAA TTTT  
     || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||   
     TC ATTCCCACGTTTGCCCTAGG CGCTTTCAGGGCGAAGATCAAGT AAGAGTTTAGAGGATAAGTTT AAGA  
TGAAA  C                    A                       T                     -    CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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