SE2521008

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2238
  • Brachypodium distachyon
  • SE2521008
  • Mutator
  • M4
  • Bd1:71539574-71540080
  • AAAAATATA
  • GAGTAAATTTCACAAACCACACTTTTTGGGGTTAGGGTTTCATTGTGCCACAGTTATCACTAATAGTCTCACAGAACCACAGTTTTTTGGGCAAGCTGTCTCACAGAACCCAAATTAGGTAGATTGGACCGTTTGATGGTATTTTTGACAGGCGAGACCCACTTGACATATGCCAAGTCCGACAGACCCATTTCGTTGCCACATCAGCTTCCGGATCCATCCGGACCCG

Secondary structure and sequence

TSD    TIR
5'



3'
AAAAATATA                -     C             G         T                     C                         AG    C                          GAC           A           C A A      T A         AG  ---   CA     A           C     C    -      -     -  -CC  TTAA    TATT
         GAGTAAATTTCACAAA CCACA TTTTTGGGGTTAG GTTTCATTG GCCACAGTTATCACTAATAGT TCACAGAACCACAGTTTTTTGGGCA  CTGT TCACAGAACCCAAATTAGGTAGATTG   CGTTTGATGGT TTTTTGACAGG G G CCCACT G CATATGCCA  TC   CGA  GACCC TTTCGTTGCCA ATCAG TTCC GGATCC ATCCG GA   CG    AGGT    
         |||||||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||   ||||||||||| ||||||||||| | | |||||| | |||||||||  ||   |||  ||||| ||||||||||| ||||| |||| |||||| ||||| ||   ||    ||||    T
         CTCATTTAAAGTGTTT GGTGT AAGAGCTCCGATC CAAAGTAGC CGGTGTCAATAGTGATTATCA AGTGTCTTGGTGTCAAAAAACCCGT  GACA AGTGTCTTGGGTTTAGTCCATCTAAT   GCAAATTACCA AAAGACTGTCC C C GGGTGG C GTGTGCGGT  AG   GCT  TTGGG AAAGCAACGGT TAGTC AAGG CCTGGG TGGGC CT   GC    TCCA    
ATATAAAAA                T     A             G         C                     A                         GA    A                          ACA           A           A C -      T A         GG  TTC   TG     C           A     -    A      C     T  ACT  TAAA    TCTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End