SE2521010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2240
  • Brachypodium distachyon
  • SE2521010
  • Mutator
  • M27
  • Bd2:35884251-35885001
  • TTAACATAA
  • TAAGAGTAAAGTCCATTTTAAACCCTGTGCTTGTAGAGGTGGACCCAATCGAACCCTGACCTGCAAATCCCTGAACTTAGCGCCCTGAACTCTCAAATCCCGGTCATTAGTGCCCTTAAGTAGGATTAGCC

Secondary structure and sequence

TSD    TIR
5'



3'
TTAACA                                                     C              CC                     C  A             AG  C        A  A  A     G  -     T   - -    AG      -   TGGGATTGTTTAGGCCACGCTGGATAAGAAGGTTTACCACTTCGAAATAAGAAACTAACAGTTTGCAATTTGGGAAAAAAAACTAGGGTTCGCGTCCCGTAGTCGGCGACGGCAGCAGTGGAGATGTCATCTGGGTCTGTGTCGAGCGGTGGTCGTCGATGGCGGAGAGGCACCGTGGGAGATAGGCGTTCACCGATGCCGTATCGTGA
      TAAGAGTAAAGTCCATTTTAAACCCTGTGCTTGTAGAGGTGGACCCAATCGAA CCTGACCTGCAAAT  CTGAACTTAGCGCCCTGAACT TC AATCCCGGTCATT  TG CCTTAAGT GG TT GCCTC GG ATTGC GAC G TGGC  GGTCTA AGC                                                                                                                                                                                                                 
      ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||| || |||||||||||||  || |||||||| || || ||||| || ||||| ||| | ||||  |||||| |||                                                                                                                                                                                                                 A
      ATTCTCATTTCAGGTAAAATTTGGGACACGAACATCTCCACCTGGGTTAGCTT GGACTGGATGTTTA  GACTTGAATCGTGGGACTTGA AG TTAGGGCCAGTAA  GC GGAATTTA CC AA CGGTT TG TCCTA GGT C AGGG  TGTCGG GGC                                                                                                                                                                                                                 
AATACA                                                     A              TA                     A  A             GG  A        -  -  A     -  T     -   A G    --      T   TTGACAAGTTTTACTTGTGAGGTCTTGTTTTTTCTGTTTTCTCTCTGAGCTAGAATTAACTATGGTTGCTCTCTTTAATTGACCTTCAACTTGAATTGTTGCGTAGGTGTGTCCGTATTATGGAAGAAGGTCTTAAAGCGCCTGAAGTACTTTAAGTGGAGCCGCGGAAGTGCGGCCGTCATGAAGTAACCGAGTATGAGGTAGCCTAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End