SE2551012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2242
  • Brachypodium distachyon
  • SE2551012
  • PIF/harbinger
  • To41
  • Bd2:40460958-40461361
  • TTA
  • AGGGCCTCTTTGGATCATGGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                       TTTTGA   AAAAATAGAGGATTCCAATCCTAAGGAATAATTCCTATAGATGCTATTTGGACCATAGGATTTGCACCAAAGAAATTTCATGGGATAGGAAATTTTCCTCCAAATTGTGGAGGAATCCAAGCATGAGGTCTGAGGTCTAACCGCTTTGAAACTTTCCTTTGAAAGTTCCAA
  AGGGCCTCTTTGGATCATGGGAT      AGG                                                                                                                                                                           
  |||||||||||||||||||||||      |||                                                                                                                                                                            
  TCCCGGAGAAACCTAGTATCCTA      ACG                                                                                                                                                                           
AT                       ------   TTTTTGTATCCTTATCCTTTTTGTTTCCTAACCTTACGGTACGGTAAAACTTATGATCCCTAAGTTTTGTATCCTTAACAATATTTTCTCATAAACCTACAAGGTATACTTTTTATATCCTAAAAAATCTAATCTACCTCATTCTCTCCTCTCTCTATCTCTCCTCTACGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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