Plant MITE

SE2531016

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2246
Brachypodium distachyon
SE2531016
hAT
Hat20
Bd2:5921164-5921340
GTCTCAAT
ATTAGAGCTGCAACTTTGTGACCCTCAGGGTACCCTTTGACCCTCCTTAGTTCAACCAAATGAACTAAAGTTTTAAAATG

Secondary structure and sequence

TSD TIR

5'

3'

GTCTCA       C      TTT                                      C           AAG        T ACA
      ATTAGAG TGCAAC   GTGACCCTCAGGGTACCCTTTGACCCTCCTTAGTTCAA CAAATGAACTA   TTTTAAAA G   
      ||||||| ||||||   |||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||| |    
      TGATCTC ACGTTG   CGCTGGGAGTCCCATGGGAAACTGGGAGGAATCAAGTT GTTTACTTGAT   AAAGTTTT C   
TAACTC       C      TAC                                      T           CAA        - AAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2531016

GTCTCAATTAGAGCTGCAACTTTGTGACCCTCAGGGTACCCTTTGACCCTCCTTAGTTCAACCAAATGAACTAAAGTTTTAAAATGACACAACTTTTGAAAAACTAGTTCATTTGTTTGAACTAAGGAGGGTCAAAGGGTACCCTGAGGGTCGCCATGTTGCACCTCTAGTCTCAAT

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