SE2551022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2252
  • Brachypodium distachyon
  • SE2551022
  • PIF/harbinger
  • To10
  • Bd2:51478626-51478866
  • TTA
  • AGAGCAAGAATACTAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      A     C    -------    -  -    --   ATATCTAGCATGTATAATAGTGAGTTATAAAGATGTGCTACTTTATTGAAACATGTTCCACATTTCAATCTCATAGATAACCT
  AGAGCA GAATA TAGT       AGTA GT CAGT  TTA                                                                                   
  |||||| ||||| ||||       |||| || ||||  |||                                                                                    
  TCTCGT CTTAT ATTA       TTGA CG TGTT  TAA                                                                                   
AT      C     T    CCAATAT    C  A    CT   ATTTATATTATAAACACGAATCAACCTCCCTTCTCTTCTCTTTAGTCAAGCATTCGATTATCAGTCTACGTTGTGTTCGAGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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