Plant MITE

SE2511023

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2253
Brachypodium distachyon
SE2511023
Tc1/Mariner
St3
Bd2:42944569-42944830
TA
TACTCCCTCCGTTCCTAAATGTTCGAAGTCTCAGCTTTGTCCTAAGTCAAACTTTTAAACTTTGACCAAGTTCATAGAAAAATCTACGAACAT

Secondary structure and sequence

TSD TIR

5'

3'

                       C       C                        -   C            C          C  CG     ATATA   -CT      T   --T        TCAATGAT
TACTCCCTCCGTTCCTAAATGTT GAAGTCT AGCTTTGTCCTAAGTCAAACTTTT AAA TTTGACCAAGTT ATAGAAAAAT TA  AACAT     AGA   TTAAAT AGT   TTATGGAA        
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||| ||  |||||     |||   |||||| |||   ||||||||        G
ATGAGGGAGGCAAGGATTTACAA CTTCAGG TCGAAACAGGATTCAGTTTGAAGA TTT AAACTGGTTCAA TATCTTTTTA AT  TTGTA     TCT   AGTTTA TCA   GATACTTT        
                       A       A                        A   C            A          T  AG     ---GA   TAT      T   TTT        TATATATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2511023

TACTCCCTCCGTTCCTAAATGTTCGAAGTCTCAGCTTTGTCCTAAGTCAAACTTTTAAACTTTGACCAAGTTCATAGAAAAATCTACGAACATATATAAGACTTTAAATTAGTTTTATGGAATCAATGATGCTATATATTTTCATAGTTTACTTATTTGATATTCTAGATGTTGATATATTTTTCTATAAACTTGGTCAAACTTTAAGAAGTTTGACTTAGGACAAAGCTAGGACTTCAAACATTTAGGAACGGAGGGAGTA

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