Plant MITE

SE2511026

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2256
Brachypodium distachyon
SE2511026
Tc1/Mariner
St9
Bd3:55424207-55424445
TA
TACTCCCTCCGTTTGGGTTTATAAGGCTC

Secondary structure and sequence

TSD TIR

5'

3'

                             CTATT   A  C      C          AC      TCAAATT    -TT     A   TTATA    T    CCTTTA  AAGA  TTTT
TACTCCCTCCGTTTGGGTTTATAAGGCTC     GAA TT GTGCCA ACTTTGATCA  AATTAT       ATAT   ATTAT TGT     AAAG TATA      GA    GT    
|||||||||||||||||||||||||||||     ||| || |||||| ||||||||||  ||||||       ||||   ||||| |||     |||| ||||      ||    ||     
ATGAGGGAGGCAAGCCCAAATATTCCGGG     CTT AA TACGGT TGAAACTGGT  TTAATG       TATA   TAATA ACG     TTTC ATAT      CT    CA    
                             TGCGC   A  A      T          AT      TAACCAT    CTC     -   CCGTG    T    AACAAC  -AGG  TAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2511026

TACTCCCTCCGTTTGGGTTTATAAGGCTCCTATTGAAATTCGTGCCACACTTTGATCAACAATTATTCAAATTATATTTATTATATGTTTATAAAAGTTATACCTTTAGAAAGAGTTTTTCAATACGGATCCAACAATATATCTTTGTGCCGCAATAATCTCATATTACCAATGTAATTTATGGTCAAAGTTTGGCATAAAATTCCGCGTGGGCCTTATAAACCCGAACGGAGGGAGTA

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