Plant MITE

SE2551039

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2269
Brachypodium distachyon
SE2551039
PIF/harbinger
To23
Bd2:57949342-57949663
TAA
AGGTAGTGTTTGGTTGAGATCATGAACTGGAATGTAATGGAATGG

Secondary structure and sequence

TSD TIR

5'

3'

TA               -G   TCA   AC       T          --   CAAAAGTTGAGATGATTCCTGTGTTTGGTTCTTAGAACACAGAGAAGTGGAATAGAACCATATGGTTCCTCAAAAGGGAATATTCTCTCAATATACCTAACCATCTCATT
  AGGTAGTGTTTGGTT  AGA   TGA  TGGAATG AATGGAATGG  CTC                                                                                                              
  |||||||||||||||  |||   |||  ||||||| ||||||||||  |||                                                                                                              C
  TCCATCACAAACCAA  TCT   GCT  ACCTTAC TTGCCTTGCC  GAT                                                                                                              
AA               GA   --C   CC       C          AA   AAGAATATCCTTACCTTACATTACCTTGTCAAGATGAAAAGATATAGGATTCTTGGTTTGTGAATCTAGTGACCAAGATGAACCTTGGTTGAGTAAGGATGTAAAAACTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2551039

TAAGGTAGTGTTTGGTTGAGATCATGAACTGGAATGTAATGGAATGGCTCCAAAAGTTGAGATGATTCCTGTGTTTGGTTCTTAGAACACAGAGAAGTGGAATAGAACCATATGGTTCCTCAAAAGGGAATATTCTCTCAATATACCTAACCATCTCATTCCTCAAAAATGTAGGAATGAGTTGGTTCCAAGTAGAACCAGTGATCTAAGTGTTTGGTTCTTAGGATATAGAAAAGTAGAACTGTTCCATTACATTCCATTCCTATAAGAATAGAACCGTTCCGTTCCATTCCACCTCGCTCTAGAACCAAACACTACCTAA

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