Plant MITE

SE2511045

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2275
Brachypodium distachyon
SE2511045
Tc1/Mariner
St1
Bd4:4416649-4416915
TA
TACTCCCTCCGTCCACAAATAAGTGTACTTCTAGTTTTGTCCTAAGTCAAAAGT

Secondary structure and sequence

TSD TIR

5'

3'

                          A       -                  G ATCA   -             A   T    C TAT          T       C      C    C    AATCCGTTT      G
TACTCCCTCCGTCCACAAATAAGTGT CTTCTAG TTTTGTCCTAAGTCAAAA T    AAG TTTGACTGACTTT TTG AAAA G   GTGGCAACAT TATGACA TAAATT GTAT ATTA         TGAAAT 
|||||||||||||||||||||||||| ||||||| |||||||||||||||||| |    ||| ||||||||||||| ||| |||| |   |||||||||| ||||||| |||||| |||| ||||         |||||| T
ATGAGGGAGGCAGGTGTTTATTCACA GAAGATC AAAACAGGATTCAGTTTT A    TTC AAACTGGTTGAAA AAC TTTT C   CGTTGTTGTG ATACTGT GTTTAG CATA TAAT         ACTTTG 
                          G       C                  G AAAA   T             C   -    - --T          T       A      C    -    ---------      A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2511045

TACTCCCTCCGTCCACAAATAAGTGTACTTCTAGTTTTGTCCTAAGTCAAAAGTATCAAAGTTTGACTGACTTTATTGTAAAACGTATGTGGCAACATTTATGACACTAAATTCGTATCATTAAATCCGTTTTGAAATGTAGTTTCATAATATACCGATTTGATGTCATATGTGTTGTTGCTCTTTTCAACAAAGTTGGTCAAATCTTAAAAAGTTTTGACTTAGGACAAAACCTAGAAGGACACTTATTTGTGGACGGAGGGAGTA

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