Plant MITE

SE2511047

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2277
Brachypodium distachyon
SE2511047
Tc1/Mariner
St7
Bd2:50128133-50128373
TA
TACTCCCTCCATTTCACAAAGAATGGCACGCACGCATTTCAAG

Secondary structure and sequence

TSD TIR

5'

3'

                           A G     A    A  ATTTT           CA           GATT  -   C              AA             TTC  ATTT
TACTCCCTCCATTTCACAAAGAATGGC C CACGC TTTC AG     GCTTTGACCGA  ATTAGACTAAT    TG AGG TTATGTGTTACAAA  TTATATCATTGGA   GT    
||||||||||||||||||||||||||| | ||||| |||| ||     |||||||||||  |||||||||||    || ||| ||||||||||||||  |||||||||||||   ||    C
ATGAGGGAGGTAAAGTGTTTCTTACCG G GTGCG AAAG TC     TGAAACTGGTT  TAATCTGGTTA    AC TCT AATATACAATGTTT  AATATAGTAACCT   CA    
                           C G     A    C  CAGCT           AC           ACAT  A   -              AA             TTC  AAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2511047

TACTCCCTCCATTTCACAAAGAATGGCACGCACGCATTTCAAGATTTTGCTTTGACCGACAATTAGACTAATGATTTGAGGCTTATGTGTTACAAAAATTATATCATTGGATTCGTATTTCAAAAACCTTTCCAATGATATAAAATTTGTAACATATAATCTACATACAATTGGTCTAATCATTGGTCAAAGTTCGACCTCGAAAAGCGTGGGCGCCATTCTTTGTGAAATGGAGGGAGTA

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