Plant MITE

SE2511050

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2280
Brachypodium distachyon
SE2511050
Tc1/Mariner
St14
Bd3:21742287-21742530
TA
TACTCCCTCCGTTCTTAAAGAATGGCATATTAGTTTTCATTAAGACAAGCTTTTGACCACAAATTACTATATTAAAGTGTGGTTTATATGTCATGAAA

Secondary structure and sequence

TSD TIR

5'

3'

              -                                   C      C                        GT       T       CCACA      ATGA  T      GA
TACTCCCTCCGTTC TTAAAGAATGGCATATTAGTTTTCATTAAGACAAG TTTTGA CACAAATTACTATATTAAAGTGTG  TTATATG CATGAAA     AGTATC    AG ATTTTT  
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||  ||||||| |||||||     ||||||    || ||||||   
ATGAGGGAGGCAAG AATTTCTTACCGTATAATCGAGAGTAATTCTGTTC GAAACT GTGTTTAATGATATAGTTTTACAC  AATATAC GTATTTT     TTATAG    TC TAAGAA  
              G                                   C      A                        AA       T       ---AA      -CAA  -      AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2511050

TACTCCCTCCGTTCTTAAAGAATGGCATATTAGTTTTCATTAAGACAAGCTTTTGACCACAAATTACTATATTAAAGTGTGGTTTATATGTCATGAAACCACAAGTATCATGAAGTATTTTTGATAAAGAATCTAACGATATTAATTTTATGTCATATAAAACACATTTTGATATAGTAATTTGTGATCAAAGCCTTGTCTTAATGAGAGCTAATATGCCATTCTTTAAGGAACGGAGGGAGTA

Copy Cancel