Plant MITE

SE2521051

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2281
Brachypodium distachyon
SE2521051
Mutator
M6
Bd2:36783165-36783725
TAAACAAAA
AGAGTAAAATACACCACTAGTCCATGAACTCGGCAAAAATGAACACTTTAGTCAACGAACTCGGAAAACGCACACTTAAACCCCTAAACTGGGACTCCTGTGTCACTTTAGTCCAAAAACAGTTCGGCGAGGCTTAAACACGCCATGTGGCCACCACGTCGGCTTCGGCCAGGACCGC

Secondary structure and sequence

TSD TIR

5'

3'

TAAACAAA                                                     A                                          C                                         -   G  -        A                CAG      G      TACTC   -    TT   ATTTTTTTTTTGCAAAATCACCATGCCCGAGCCGCAGCGAGAGGCAAGGCAGCCGCGCCCAGACAAGGAGCCT
        AGAGTAAAATACACCACTAGTCCATGAACTCGGCAAAAATGAACACTTTAGTC ACGAACTCGGAAAACGCACACTTAAACCCCTAAACTGGGACT CTGTGTCACTTTAGTCCAAAAACAGTTCGGCGAGGCTTAAA CAC CC ATGTGGCC CCACGTCGGCTTCGGC   GACCGC GGCTGC     GAT TTTC  AGG                                                                         
        ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| ||||||||||||||||   |||||| ||||||     ||| ||||  |||                                                                         G
        TCTCATTTTATGTGGTGATCAGGTACTTGAGCCGTTTTTACTTGTGAAATCAG TGCTTGAGTTTTTTGCGTGTGAATTTGGGGATTTGACCCTGA GACACAGTGAAATCAGGTTTTTGTCAAGCCGCTCCGAATTT GTG GG TGTACCGG GGTGCGGCCGAAGCCG   CTGGTG AGTGGC     CGC GTAG  CAG                                                                         
AAAACAAA                                                     G                                          T                                         T   -  A        C                ---      A      -----   A    AG   TTTTAACTCGCAACACCTGAACTATCGTTGGAATCCGCTCCGCCGACGCCGTTGCTGCACCAAGAGTCCCGGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2521051

TAAACAAAAGAGTAAAATACACCACTAGTCCATGAACTCGGCAAAAATGAACACTTTAGTCAACGAACTCGGAAAACGCACACTTAAACCCCTAAACTGGGACTCCTGTGTCACTTTAGTCCAAAAACAGTTCGGCGAGGCTTAAACACGCCATGTGGCCACCACGTCGGCTTCGGCCAGGACCGCGGGCTGCTACTCGATTTTCTTAGGATTTTTTTTTTGCAAAATCACCATGCCCGAGCCGCAGCGAGAGGCAAGGCAGCCGCGCCCAGACAAGGAGCCTGGGGCCCTGAGAACCACGTCGTTGCCGCAGCCGCCTCGCCTAAGGTTGCTATCAAGTCCACAACGCTCAATTTTGACGAGATGACGCCGGTGAAGTGGTCGCCGAAGCCGGCGTGGCGGCCATGTAGGGTGTTTTAAGCCTCGCCGAACTGTTTTTGGACTAAAGTGACACAGTAGTCCCAGTTTAGGGGTTTAAGTGTGCGTTTTTTGAGTTCGTGGACTAAAGTGTTCATTTTTGCCGAGTTCATGGACTAGTGGTGTATTTTACTCTAAACAAAA

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