SE2551064

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2294
  • Brachypodium distachyon
  • SE2551064
  • PIF/harbinger
  • To50
  • Bd3:13423269-13423517
  • TAA
  • AGGCCCTGTTTGCTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C               GCCGACGGACGCCCTGCCAAAATTGGAGTGCCAACGCTCCCGCAGGCCAGCGTTTGCTTCGGCGCCAGCAAATTGGCGCGCCCGTGTTGCTTTGCTGAAAATC
  AGG CCTGTTTGCTTTGCG                                                                                                       
  ||| |||||||||||||||                                                                                                       C
  TCC GGACAAACGAAAGAC                                                                                                       
AA   C               GGGGTCAGGTAGTGCGGTTAGCAACCGAGCGATTTAGCACCTGCTCGCTAAGACGGCGGTCCTAAAGCGGGCACGCACCCGCGTTTGTTGTTGACTGCGCCTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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