Plant MITE

SE2551079

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2309
Brachypodium distachyon
SE2551079
PIF/harbinger
To24
Bd2:11178076-11178276
TTA
AGAGCATGTTCAATGCAAGGTGCTTAGGGAGGTGCTTGCGCAAAGAAAACCGGGTTTTGTCTAAGCACTGGTGCTTGTGTTCTATA

Secondary structure and sequence

TSD TIR

5'

3'

TT                             A      TGC      -A       G   TG   -                G       GGAC        AA
  AGAGCATGTTCAATGCAAGGTGCTTAGGG GGTGCT   GCAAAG  AAACCGG TTT  TCT AAGCACTGGTGCTTGT TTCTATA    AGGTGCTT  
  ||||||||||||||||||||||||||||| ||||||   ||||||  ||||||| |||  ||| |||||||||||||||| |||||||    ||||||||   
  TCTCGTACAAGTTACGTTCCACGAATTCC TCACGA   TGTTTT  TTTGGCC AAA  AGA TTCGTGGTCACGAATA AAGATAT    TCCACGGA  
AT                             A      ---      AA       -   TA   G                -       GATC        TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2551079

TTAGAGCATGTTCAATGCAAGGTGCTTAGGGAGGTGCTTGCGCAAAGAAAACCGGGTTTTGTCTAAGCACTGGTGCTTGTGTTCTATAGGACAGGTGCTTAATTAGGCACCTCTAGTATAGAAATAAGCACTGGTGCTTGAGAATAAACCGGTTTAATTTTGTAGCACTACCTTAAGCACCTTGCATTGAACATGCTCTTA

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