Plant MITE

SE2551086

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2316
Brachypodium distachyon
SE2551086
PIF/harbinger
To14
Bd5:6770947-6771273
TTA
ACAGCTCGTTTGGCAACCA

Secondary structure and sequence

TSD TIR

5'

3'

TT               A   AGAAT            - GATAAAAATGAAATGAAATCCAATTTTTGATAGGATTTCATTTGGTTGAATTTGAATTCCGGGTTGAAAAATCATGTTTGTCTACCACATGGAATTGAAGAGTGAGAGACAATTCTAGAGAAATGA
  ACAGCTCGTTTGGCA CCA     TCATTTCATTTT T                                                                                                                              
  ||||||||||||||| |||     |||||||||||| |                                                                                                                              T
  TGTCGAGCAAACCGT GGT     AGTAGACCCTTA C                                                                                                                              
AT               G   -----            T TTAACATCTTAAGTAAAACTTAAGGTTTTTTGTTGAACAAACCAACCGTGCCTTAATCGGTGTCCTTAAGTTAGAGTTTGAGGTACCTTAGTGTGATATTGATCGGAGTTAAGGAGAGATTTTCGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2551086

TTACAGCTCGTTTGGCAACCAAGAATTCATTTCATTTTTGATAAAAATGAAATGAAATCCAATTTTTGATAGGATTTCATTTGGTTGAATTTGAATTCCGGGTTGAAAAATCATGTTTGTCTACCACATGGAATTGAAGAGTGAGAGACAATTCTAGAGAAATGATGGCTTTTAGAGAGGAATTGAGGCTAGTTATAGTGTGATTCCATGGAGTTTGAGATTGAATTCCTGTGGCTAATTCCGTGCCAACCAAACAAGTTGTTTTTTGGAATTCAAAATGAATTCTACAATTCTATTCCCAGATGATGGGTGCCAAACGAGCTGTTA

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