Plant MITE

SE2511097

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2327
Brachypodium distachyon
SE2511097
Tc1/Mariner
St11
Bd2:59289277-59289487
TA
TACTCCCTCCATTCCAAAATACACCTCATATAGATTTGTGCA

Secondary structure and sequence

TSD TIR

5'

3'

               AA      C TCA         -GTG  CTTAGA   --AG   G   --TCG     -A       -   ------------         G G   AT
TACTCCCTCCATTCC  AATACA C   TATAGATTT    CA      CCA    GCA CTC     TTTCT  GTGCCTG ACC            ACTCATATT G TTA  
|||||||||||||||  |||||| |   |||||||||    ||      |||    ||| |||     |||||  ||||||| |||            ||||||||| | |||   
ATGAGGGAGGTAAGG  TTATGT G   ATATCTAAA    GT      GGT    TGT GAG     AGAGA  CATGGGC TGG            TGAGTGTAG T AAT  
               AG      T TAC         AAGA  AAACAA   GTTA   G   TAAAA     AC       G   GCCGGTTATTGA         G A   AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2511097

TACTCCCTCCATTCCAAAATACACCTCATATAGATTTGTGCACTTAGACCAAGGCAGCTCTCGTTTCTAGTGCCTGACCACTCATATTGGGTTAATAATAAATGGATGTGAGTAGTTATTGGCCGGGTGCGGGTACCAAGAGAAAAATGAGGTGTATTGTGGAACAAATGAGAAAAATCTATACATGTTGTATTGAGGAATGGAGGGAGTA

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