SE2531114

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2344
  • Brachypodium distachyon
  • SE2531114
  • hAT
  • Hat37
  • Bd3:36406791-36407000
  • TCGCTATT
  • GC

Secondary structure and sequence

TSD    TIR
5'



3' 
  TC  TATT              G GAAA   A    CT  -     ---A  A -    CTTGGGTTGCTTACACTACGAATTTTCAGGACATAGTGCACTTTTCTTCA
    GC    CAGGGGCGGAGCTA A    AGA TGAA  GG TGCAC    AT G TCTT                                                  
    ||    |||||||||||||| |    ||| ||||  || |||||    || | ||||                                                  T
    CG    GTCCCCGCCTCGAT T    GGA ACGT  GT CGTGG    AG G CTAA                                                  
TTAT  --CT              G -ATC   G    --  C     TCCA  - T    AAAAAAAATGATCGTTAGTCCTATTTTCAAACGTTACACGTGGTCCAATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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