SE2551116

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2346
  • Brachypodium distachyon
  • SE2551116
  • PIF/harbinger
  • To51
  • Bd1:23989847-23990091
  • TGA
  • AGGGCTTGTTTGGTTCTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TG    CT      G      CCAACATT    C       AAA       CCTATACTATTTT    TTTGGCTGGTTGGTAGCCAACAATTTGGTTGCCAAAAGAATCTTGCCAACCTATTCCCATC
  AGGG  TGTTTG TTCTTG        TGCC TACCAAA   TTGGCAA             GGCC                                                             
  ||||  |||||| ||||||        |||| |||||||   |||||||             ||||                                                             T
  TCCC  ACAAAC AAGAAC        ACGG ATGGTTT   AACGGTT             GATA                                                             
AG    AC      G      TGATAAAC    A       -AA       -------------    ACCGATCGGTTTTTTAACCGATTCCTAAACAACCGGGTATCAACCGTTCTAAACACTCGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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