SE2551117

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2347
  • Brachypodium distachyon
  • SE2551117
  • PIF/harbinger
  • To16
  • Bd4:2923174-2923471
  • TTA
  • AGGCCTTGTTTGGT

Secondary structure and sequence

TSD    TIR
5'



3'
TT              --------------ACTA    T    G    TTTT  --    T  T -   A   C AATTGAAAACACTAGAAACCTCAAATGGTTGTTTGGTACGAAGGGTTTAGAGGGGATTATCCCTAGTTTTCCACCACAAACATTCCA
  AGGCCTTGTTTGGT                  GAGT TTTG GGTG    CT  AGGG AT A TCC CTC A                                                                                       
  ||||||||||||||                  |||| |||| ||||    ||  |||| || | ||| ||| |                                                                                        
  TCCGGAACAAACCA                  GTGA TCAC AAAA    CC  AAAC TC C AAA CCC A                                                                                       
AT              CAACCACATAAAAAATCG    -    -    ----  AT    -  C C   -   - CAAGTGGGTTTTGAGAGTTTTTAGGTTTTGTGATCACAAAAGAATCTTCTTGTGATCATACTCTTCACAAAATTAAACCATGTTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End