SE2551121

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2351
  • Brachypodium distachyon
  • SE2551121
  • PIF/harbinger
  • To32
  • Bd3:59793594-59793863
  • TAA
  • AGGCCACTCCCAATGCTAGTCTCTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                -TA        -----G  C      TTAGGCATTTTGATGACATGACGTCTTATTAATGATGAAACCGTCTCTTATGCTAGCGACCGTCTTTTCACGCAAACCAACACAAAGTCATTAA
  AGGCCACTCCCAATGC   GTCTCTTA      CA GTCATC                                                                                              
  ||||||||||||||||   ||||||||      || ||||||                                                                                              T
  TCCGGTGAGGGTTGCG   CAGAGAAT      CA GAGAAT                                                                                              
AA                TAG        ATACAA  -      CGGGTGTTATTTACAATTCTTTGGTATGGGGGTTACGTGACAGAGAATAAAAACAGAGATTTCATCGTCAATAAATTATTGAAACACTCTTTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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