Plant MITE

SE2551128

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2358
Brachypodium distachyon
SE2551128
PIF/harbinger
To53
Bd2:15575054-15575422
GAA
GGGTGCGTTTGGTTTA

Secondary structure and sequence

TSD TIR

5'

3'

GAA            -       T         CT   CCA   CGGGCTACACTATCCTAGCTGAGCTAAAGCTTGCGGAGGCAAGATCAATGTTTGGTTCTATCTAGCCCGCTAGTTCAGAACGTGAATAAAATAGTAGGATTTGATTGGTCAAATTTTAACTATCACATGATGCGGTTGTTTTCT
   GGGTGCGTTTGG TTTATTA CTCAGCTAG  TAG   AGC                                                                                                                                                
   |||||||||||| ||||||| |||||||||  |||   |||                                                                                                                                                 
   CCCACGCAAACC AGATGCC GTTTCATTT  TTG   ATC                                                                                                                                                
AAG            T       -         --   ---   GGGACGGTCCGTTCCGATTCGCAAACCATGACTATTTTATAAGAATGAAAACTACCATTAAATCGGCCGTTGACTGTGGTTTAGGAACGAGAGCCTCCTCTCGGCTAAACCGAGCGAGTGCCGCCGTTCGCTCACTTTCGACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2551128

GAAGGGTGCGTTTGGTTTATTATCTCAGCTAGCTTAGCCAAGCCGGGCTACACTATCCTAGCTGAGCTAAAGCTTGCGGAGGCAAGATCAATGTTTGGTTCTATCTAGCCCGCTAGTTCAGAACGTGAATAAAATAGTAGGATTTGATTGGTCAAATTTTAACTATCACATGATGCGGTTGTTTTCTTTCAGCTTTCACTCGCTTGCCGCCGTGAGCGAGCCAAATCGGCTCTCCTCCGAGAGCAAGGATTTGGTGTCAGTTGCCGGCTAAATTACCATCAAAAGTAAGAATATTTTATCAGTACCAAACGCTTAGCCTTGCCTGGCAGGGCTAGTTTTTACTTTGCCGTAGATCCAAACGCACCCGAA

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