SE0450007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2377
  • Brassica rapa
  • SE0450007
  • PIF/harbinger
  • To1
  • A02:14759041-14759236
  • TTA
  • AGGGCATCTCCAACCCCACTCTATATTTCACTCCAAAATTGAGAAAATGGAGTGGGAAATGGAGTAATGAACAAAAAATAAAAAGATTACTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                            C                                    A                 AG       CATT
  AGGGCATCTCCAACCCCACTCTATATTT ACTCCAAAATTGAGAAAATGGAGTGGGAAATGGAGT ATGAACAAAAAATAAAA  ATTACTC    
  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||     
  TCTCGTAGAGGTTGGGGTGAGGTATAAA TGAGGTTTTAACTCTTTTATCTCACCCTTTACCTCA TACTTGTTTTTTATTTT  TAATGAG    
AT                            A                                    C                 CG       ATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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