Plant MITE

SE0410014

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2384
Brassica rapa
SE0410014
Tc1/Mariner
St3
A01:9486184-9486447
TA
TACTCCCTCCGTTTTTTATTATAAGTCGTTTTAGAG

Secondary structure and sequence

TSD TIR

5'

3'

                  T              G  A   TTTTTTGTTCCAAATTATATGTCGTTTTCGGTTTTCTATGTAAAATTTATTAATAATTAATGTTGTATAACCAATGGTAATATATCTTATAT
TACTCCCTCCGTTTTTTA TATAAGTCGTTTTA AG AAC                                                                                            
|||||||||||||||||| |||||||||||||| || |||                                                                                            T
ATGAGGGAGGCAAAAAAT ATATTCAGCAAAAT TC GAT                                                                                            
                  T              G  -   ACGTGCATCTAATTCTTTTGGTAATTAAAGAATATAAAAGATTTGTTTTTGTAGTAATTAATAAATGGATTGATGTTAAGTTGGTTATCTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410014

TACTCCCTCCGTTTTTTATTATAAGTCGTTTTAGAGAAACTTTTTTGTTCCAAATTATATGTCGTTTTCGGTTTTCTATGTAAAATTTATTAATAATTAATGTTGTATAACCAATGGTAATATATCTTATATTTTTCTATTGGTTGAATTGTAGTTAGGTAAATAATTAATGATGTTTTTGTTTAGAAAATATAAGAAATTAATGGTTTTCTTAATCTACGTGCATAGCTGTAAAACGACTTATATTAAAAAACGGAGGGAGTA

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