Plant MITE

SE0410015

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2385
Brassica rapa
SE0410015
Tc1/Mariner
St4
A02:22197523-22197768
TA
TACTCCCTCCGT

Secondary structure and sequence

TSD TIR

5'

3'

            ATTTTTT  T          CCA  TTTGCACAAACATTAAGAAAAGTGATACAATTTCTATTTTAACCTTTTCAATTGCTTTAGATTGACTAAAGATGCTAGAAGTCACGT
TACTCCCTCCGT       TA TTGACGTTTT   GC                                                                                       
||||||||||||       || ||||||||||   ||                                                                                       T
ATGAGGGAGGCA       AT AACTGCAAAA   TC                                                                                       
            AGCCCTT  C          ---  ACTAAAAGAAAACACAGTTATATGAACTGCAAATGCCTCAAGTTACGTTTATTACTATTTTCAACTACAAAGATGGGAACATTATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410015

TACTCCCTCCGTATTTTTTTATTTGACGTTTTCCAGCTTTGCACAAACATTAAGAAAAGTGATACAATTTCTATTTTAACCTTTTCAATTGCTTTAGATTGACTAAAGATGCTAGAAGTCACGTTAATATTACAAGGGTAGAAACATCAACTTTTATCATTATTTGCATTGAACTCCGTAAACGTCAAGTATATTGACACAAAAGAAAATCACTAAAACGTCAACTATTCCCGAACGGAGGGAGTA

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