Plant MITE

SE0450018

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2388
Brassica rapa
SE0450018
PIF/harbinger
To6
A05:19729212-19729530
TTA
AGGGCATCTCCAATGTAACTCTATTTTTTCCTCTATAATTTACACAAAAATAGAGTAACTCTATTTTAGTGTAACTTTTGCTCCAATGGTGTTACTCTATAATAGAGTTACTCTATTATAGAGTGAAATATAGAGGAATGTCACTTTTTCACTC

Secondary structure and sequence

TSD TIR

5'

3'

TT   G         T  A                                                                                           T                                  CT    C    CAAA
  AGG CATCTCCAA GT ACTCTATTTTTTCCTCTATAATTTACACAAAAATAGAGTAACTCTATTTTAGTGTAACTTTTGCTCCAATGGTGTTACTCTATAATAGAGT ACTCTATTATAGAGTGAAATATAGAGGAATGTCA  TTTT ACTC    
  ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||| ||||     
  TCT GTAGAGGTT CA TGAGATAAAAAAGGAGATATTAAATGTGTTTTTATCTCATTGAGATAAAATCACATTGAAAACGAGGTTACCACAATGAGATATTATCTCA TGAGATAATATCTCACTTTATATCTCCTTACAGT  AAAA TGAG    
AT   G         C  G                                                                                           T                                  AT    -    ATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450018

TTAGGGCATCTCCAATGTAACTCTATTTTTTCCTCTATAATTTACACAAAAATAGAGTAACTCTATTTTAGTGTAACTTTTGCTCCAATGGTGTTACTCTATAATAGAGTTACTCTATTATAGAGTGAAATATAGAGGAATGTCACTTTTTCACTCCAAATATAGAGTAAAATATGACATTCCTCTATATTTCACTCTATAATAGAGTTACTCTATTATAGAGTAACACCATTGGAGCAAAAGTTACACTAAAATAGAGTTACTCTATTTTTGTGTAAATTATAGAGGAAAAAATAGAGTGACCTTGGAGATGGTCTTA

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