SE0410019

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2389
  • Brassica rapa
  • SE0410019
  • Tc1/Mariner
  • St5
  • A01:15987828-15988077
  • TA
  • TACTCCCTCTGTTTCTTAATGTTACATATTCTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
                                  -CTTTTTCA  T -      T     ACATTAAATTTGCATAATTTTTTGTGTTTATCTTTGTTCTATAATTTTAAACCAATAAAAATTCAG
TACTCCCTCTGTTTCTTAATGTTACATATTCTAG         CA A TTTTAA AAAAC                                                                  
||||||||||||||||||||||||||||||||||         || | |||||| |||||                                                                  T
ATGAGGGAGACAAGGAATTATAATGTATAAGATC         AC A AATTTT TAGAT                                                                  
                                  TTTTTTTTA  - A      C     AAAAAAATTTAAAAGTTCTGTACAGAATAATTGATTACCGTTTAAAGTTTTTTGAATTAACGTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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