Plant MITE

SE0430021

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2391
Brassica rapa
SE0430021
hAT
Hat7
A06:24570900-24571124
GTTGGAGC
GTTGGAGCCAGGGGCGA

Secondary structure and sequence

TSD TIR

5'

3'

   GG            ATCTA   TAATTTTTCAGTGGGTGCAAAATAGAAAAAAGAACAAAGGGGGAATCGAACTTGAGACTTGAAGGGGGTGCACAACACTACTAAACCATC
GTT  AGCCAGGGGCGA     GAA                                                                                          
|||  ||||||||||||     |||                                                                                           
CGA  TTGGTCCCCGCT     TCG                                                                                          
   GG            -----   GTCACGGTTCTGATACCACCGTGCACGTGGGCATTTAAATATTTATAAATGGCGAAACATACATTTTTATGTTTCTTTGGTCGATCTAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430021

GTTGGAGCCAGGGGCGAATCTAGAATAATTTTTCAGTGGGTGCAAAATAGAAAAAAGAACAAAGGGGGAATCGAACTTGAGACTTGAAGGGGGTGCACAACACTACTAAACCATCTGATCTAGCTGGTTTCTTTGTATTTTTACATACAAAGCGGTAAATATTTATAAATTTACGGGTGCACGTGCCACCATAGTCTTGGCACTGGCTTCGCCCCTGGTTGGAGC

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