SE0450027

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2397
  • Brassica rapa
  • SE0450027
  • PIF/harbinger
  • To8
  • A06:2755263-2755544
  • TAA
  • AGAGCATCAGCATTAGTGAACCCCTTGGAAGGGGTTCACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA        A            C  T   AA          --     TTTTTTTATTATTATTTTTTTCTGTTTGATTTTTGTTTTTAAAAAAAAAAAAAAATTTATAACCGGACCAATCGCGCGCCGCCACGTATCGCGG
  AGAGCATC GCATTAGTGAAC CC TGG  GGGGTTCACA  AAGCA                                                                                              
  |||||||| |||||||||||| || |||  ||||||||||  |||||                                                                                               
  TCTCGTAG CGTAATCACTTG GG ACC  CCCCAAGTGT  CAAAA                                                                                              
AA        A            A  T   --          GT     GCTTTTTTTTTTTTATAATTTTATTTGTTTTAGTTACTTAGAGGGAGAATCTTCAAGTGACGTGACTTGGGCCTAGTAGTGACATCGCGCCCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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