Plant MITE

SE0430029

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2399
Brassica rapa
SE0430029
hAT
Hat9
A06:23357517-23357729
ATTAAAGA
CAGGGCCGGCT

Secondary structure and sequence

TSD TIR

5'

3'

ATTAAAGA           CAAGATAATAGT    CCTT      A     TTTTTTACATGTATATATGAATAATTTAAAAATTTTGGGCCCCTATCCTTAATTATTTTTT
        CAGGGCCGGCT            GGGC    GGGCAA AAAAT                                                             
        |||||||||||            ||||    |||||| |||||                                                              
        GTCCCGGCCGA            CCCG    CCCGTT CCCCG                                                             
AGAAATTA           ----------AT    -TAC      C     CACCGGGGTCCCGGGTTTGTCAAAAATTGTTTTTATCATACTTTCTCCCCAGGTTAAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430029

ATTAAAGACAGGGCCGGCTCAAGATAATAGTGGGCCCTTGGGCAAAAAAATTTTTTTACATGTATATATGAATAATTTAAAAATTTTGGGCCCCTATCCTTAATTATTTTTTAAAAAATTGGACCCCTCTTTCATACTATTTTTGTTAAAAACTGTTTGGGCCCTGGGGCCACGCCCCCTTGCCCCATGCCCTAAGCCGGCCCTGATTAAAGA

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