Plant MITE

SE0410030

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2400
Brassica rapa
SE0410030
Tc1/Mariner
St6
Scaffold000422:10167-10408
TA
TACTCCCTCCGTTTCATTTTATTTGTCGT

Secondary structure and sequence

TSD TIR

5'

3'

     C         AT   AT       -  - A    A  CACACAGACTAAGAAAACATATAATTTTATATAATTCCAAAACAAAAACACAATTACCTATACACATAACCATTTTTCAAC
TACTC CTCCGTTTC  TTT  TTGTCGT TC T GGTT TG                                                                                 
||||| |||||||||  |||  ||||||| || | |||| ||                                                                                  
ATGAG GAGGCAAAG  AAA  AACAGCA CA C CTTT TT                                                                                 
     A         CT   CT       A  T -    -  TTAAAGCAAAGTTTTATTCACAGCAAAATCTCAAAGTTACGTTTTAAATAATTATTCTAAAAGGTGAAGTAAAAAGATAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410030

TACTCCCTCCGTTTCATTTTATTTGTCGTTCTAGGTTATGCACACAGACTAAGAAAACATATAATTTTATATAATTCCAAAACAAAAACACAATTACCTATACACATAACCATTTTTCAACCAATAGAAAAATGAAGTGGAAAATCTTATTAATAAATTTTGCATTGAAACTCTAAAACGACACTTATTTTGAAACGAAATTTTTTTCCTACAACGACAATCAAATCGAAACGGAGAGAGTA

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