SE0430034

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2404
  • Brassica rapa
  • SE0430034
  • hAT
  • Hat11
  • A06:1923152-1923465
  • TCTGAATG
  • GCAGGGGCGTCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TCTGAAT              ----------    ACAGCCAACTGAAGCATTGGCTTAGGGCCCCCTTTTTTTAAGACCTCCATTTTTAAAAGTTTTATTATAATTTTTATAAATAATTTTGGATTTTACTGTTTTGTAAAGTAAAAAAATATACCAATGT
       GCAGGGGCGTCCCT          TGGC                                                                                                                               
       ||||||||||||||          ||||                                                                                                                                
       TGTCCCTGCAGGGA          TCTG                                                                                                                               
GTAAGTC              TCTCAATACC    GTAGTTGTTTTTTCTTTAACCCCCGGATAGATTAACACCTAAATAAAATAAAAATTACAAAGAAATAATTATAATAAAAACAAAAAAGTGACTGTATAATCATTACCTGACTTAAATTAAGTAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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